課程名稱 |
植物基因體學 Plant Genomics |
開課學期 |
104-1 |
授課對象 |
生物資源暨農學院 作物科學組 |
授課教師 |
董致韡 |
課號 |
Agron5056 |
課程識別碼 |
621 U6450 |
班次 |
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學分 |
3 |
全/半年 |
半年 |
必/選修 |
選修 |
上課時間 |
星期五6,7,8(13:20~16:20) |
上課地點 |
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備註 |
農藝館316與劉力瑜、黃永芬合開 總人數上限:16人 |
Ceiba 課程網頁 |
http://ceiba.ntu.edu.tw/1041Agron5056_ |
課程簡介影片 |
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核心能力關聯 |
核心能力與課程規劃關聯圖 |
課程大綱
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課程概述 |
Genome science has been one of the most blooming sciences in the past decade. The complete genome sequences of the dicot model plant, Arabidopsis, and of the monocot crops such as rice, sorghum and maize are released. In addition, many crops and plants are undergone sequencing. The genomic information provides various research methodologies and speeds up traditional researches. This course will emphasize on genetic mapping, physical mapping, and genome sequencing and annotating to dissect plant genomes. Consequently, this course will introduce the applications of genomics in positional cloning, gene expression, comparative mapping, genetic variation and so on. |
課程目標 |
Organization and Structure of Genomes
Assemblies of Genetic and Physical Maps
Genome Sequencing Projects
Plant Functional Genomics
Bioinformatics-Sequence alignment, comparative genomics
SNPs and Variation
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課程要求 |
待補 |
預期每週課後學習時數 |
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Office Hours |
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指定閱讀 |
待補 |
參考書目 |
Benfey P.N., and Protopapas A.D., “Genomics” Pearson Education, USA, 2005
Cullis C.A. “Plant Genomics and Proteomics”, John Wiley & Son (Asia), USA, 2004
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評量方式 (僅供參考) |
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週次 |
日期 |
單元主題 |
第1週 |
9/18 |
Introduction of Plant Genomics: Organization and Structure of Genomes (Huang) |
第2週 |
9/25 |
Next Generation Sequencing (NGS) in Plant Genomics (Tung) |
第3週 |
10/02 |
Genome organisation and Linkage Map construction (Huang) |
第4週 |
10/09 |
放假 |
第5週 |
10/16 |
Sequence Alignment (Liu) |
第6週 |
10/23 |
Sequence Alignment: Lab (Liu) |
第7週 |
10/30 |
Genome Sequencing Methods and Strategies (Huang) |
第8週 |
11/06 |
Genesis of New Genes (Huang) |
第9週 |
11/13 |
Global Gene Expression (Liu) |
第10週 |
11/20 |
Global Gene Expression: Lab (Liu) |
第11週 |
11/27 |
Systems Biology: Gene Modules and Network + WGCNA Lab (Liu) |
第12週 |
12/04 |
Students' presentation (Huang) |
第13週 |
12/11 |
Genome Variation (Tung) |
第14週 |
12/18 |
Comparative Genomics (Tung) |
第15週 |
12/25 |
The Application of NGS data on Plant Genome Studies: Lab (Wei Fu-Jin) |
第16週 |
1/01 |
放假 |
第17週 |
1/08 |
Exam (Tung) |
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